SCIBERG NGS DATA ANALYSIS TUTORIAL

UNDER DEVELOPEMENT (COMING IN FALL 2023)

Setting up Ubuntu/Linux on a desktop PC or a laptop

Installing software for NGS data analysis

Introduction to Unix command line

Data sources and data formats

Introduction to custom scripting with Shell/Bash, AWK and Python

Most popular sequencing instruments

Quality control of NGS data

Short read alignment

DNA-seq data analysis

RNA-seq data analysis

Bisulfite-seq data analysis

ChIP-seq data analysis

Metagenomics