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RESOURCES > BIOINFORMATICS SCRIPTS

BIOINFORMATICS SCRIPTS

QC and analysis of reads in FASTQ files
Trimming and filtering of NGS reads
Removing duplicated sequences from FASTA files
Extracting specific sequences from FASTA files
Preparing FASTA references for main RNA classes
Manipulations with FASTQ and FASTA files in Linux Bash/Shell
Converting GTF file into BED file
Extracting promoter and TSS sequences from a genome FASTA
Reads alignment with bowtie/bowtie2, bwa, HiSat and STAR
Manipulations with SAM files
Calculate raw read counts with eXpress and RSEM

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